Genetic mapping of centromeres in the nine Citrus clementina chromosomes using half-tetrad analysis and recombination patterns in unreduced and haploid gametes
Identifieur interne : 000636 ( Main/Exploration ); précédent : 000635; suivant : 000637Genetic mapping of centromeres in the nine Citrus clementina chromosomes using half-tetrad analysis and recombination patterns in unreduced and haploid gametes
Auteurs : Pablo Aleza [Espagne] ; José Cuenca [Espagne] ; María Hernández [Espagne] ; José Juárez [Espagne] ; Luis Navarro [Espagne] ; Patrick Ollitrault [Espagne, France]Source :
- BMC Plant Biology [ 1471-2229 ] ; 2015.
Abstract
Mapping centromere locations in plant species provides essential information for the analysis of genetic structures and population dynamics. The centromere’s position affects the distribution of crossovers along a chromosome and the parental heterozygosity restitution by 2n gametes is a direct function of the genetic distance to the centromere. Sexual polyploidisation is relatively frequent in
Triploid progenies were derived from unreduced megagametophytes produced by second-division restitution. Centromere positions were mapped genetically for all linkage groups using half-tetrad analysis. Inference of the physical locations of centromeres revealed one acrocentric, four metacentric and four submetacentric chromosomes. Crossover interference was observed in unreduced gametes, with variation seen between chromosome arms. For haploid gametes, a strong decrease in the recombination rate occurred in centromeric and pericentromeric regions, which contained a low density of genic sequences. In chromosomes VIII and IX, these low recombination rates extended beyond the pericentromeric regions. The genomic region corresponding to a genetic distance < 5cM from a centromere represented 47% of the genome and 23% of the genic sequences.
The centromere positions of the nine citrus chromosomes were genetically mapped. Their physical locations, inferred from the genetic ones, were consistent with the sequence constitution and recombination pattern along each chromosome. However, regions with low recombination rates extended beyond the pericentromeric regions of some chromosomes into areas richer in genic sequences. The persistence of strong linkage disequilibrium between large numbers of genes promotes the stability of epistatic interactions and multilocus-controlled traits over successive generations but also maintains multi-trait associations. Identification of the centromere positions will allow the development of simple methods to analyse unreduced gamete formation mechanisms in a large range of genotypes and further modelling of genetic inheritance in sexual polyploidisation breeding schemes.
The online version of this article (doi:10.1186/s12870-015-0464-y) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12870-015-0464-y
PubMed: 25848689
PubMed Central: 4367916
Affiliations:
- Espagne, France
- Languedoc-Roussillon, Occitanie (région administrative), Province de Valence
- Montpellier
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic mapping of centromeres in the nine <italic>Citrus clementina</italic> chromosomes using half-tetrad analysis and recombination patterns in unreduced and haploid gametes</title><author><name sortKey="Aleza, Pablo" sort="Aleza, Pablo" uniqKey="Aleza P" first="Pablo" last="Aleza">Pablo Aleza</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Cuenca, Jose" sort="Cuenca, Jose" uniqKey="Cuenca J" first="José" last="Cuenca">José Cuenca</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Hernandez, Maria" sort="Hernandez, Maria" uniqKey="Hernandez M" first="María" last="Hernández">María Hernández</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Juarez, Jose" sort="Juarez, Jose" uniqKey="Juarez J" first="José" last="Juárez">José Juárez</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Navarro, Luis" sort="Navarro, Luis" uniqKey="Navarro L" first="Luis" last="Navarro">Luis Navarro</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">CIRAD, UMR AGAP, Avenue Agropolis - TA A-75/02 F‐34398, Montpellier, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR AGAP, Avenue Agropolis - TA A-75/02 F‐34398, Montpellier</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25848689</idno><idno type="pmc">4367916</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4367916</idno><idno type="RBID">PMC:4367916</idno><idno type="doi">10.1186/s12870-015-0464-y</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000622</idno><idno type="wicri:Area/Pmc/Curation">000621</idno><idno type="wicri:Area/Pmc/Checkpoint">000500</idno><idno type="wicri:Area/Ncbi/Merge">001A70</idno><idno type="wicri:Area/Ncbi/Curation">001A70</idno><idno type="wicri:Area/Ncbi/Checkpoint">001A70</idno><idno type="wicri:Area/Main/Merge">000636</idno><idno type="wicri:Area/Main/Curation">000636</idno><idno type="wicri:Area/Main/Exploration">000636</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genetic mapping of centromeres in the nine <italic>Citrus clementina</italic> chromosomes using half-tetrad analysis and recombination patterns in unreduced and haploid gametes</title><author><name sortKey="Aleza, Pablo" sort="Aleza, Pablo" uniqKey="Aleza P" first="Pablo" last="Aleza">Pablo Aleza</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Cuenca, Jose" sort="Cuenca, Jose" uniqKey="Cuenca J" first="José" last="Cuenca">José Cuenca</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Hernandez, Maria" sort="Hernandez, Maria" uniqKey="Hernandez M" first="María" last="Hernández">María Hernández</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Juarez, Jose" sort="Juarez, Jose" uniqKey="Juarez J" first="José" last="Juárez">José Juárez</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Navarro, Luis" sort="Navarro, Luis" uniqKey="Navarro L" first="Luis" last="Navarro">Luis Navarro</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation></author><author><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia Spain</nlm:aff><country>Espagne</country><placeName><region type="province">Province de Valence</region></placeName><wicri:cityArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada</wicri:cityArea></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">CIRAD, UMR AGAP, Avenue Agropolis - TA A-75/02 F‐34398, Montpellier, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR AGAP, Avenue Agropolis - TA A-75/02 F‐34398, Montpellier</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author></analytic><series><title level="j">BMC Plant Biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Mapping centromere locations in plant species provides essential information for the analysis of genetic structures and population dynamics. The centromere’s position affects the distribution of crossovers along a chromosome and the parental heterozygosity restitution by 2n gametes is a direct function of the genetic distance to the centromere. Sexual polyploidisation is relatively frequent in <italic>Citrus</italic> species and is widely used to develop new seedless triploid cultivars. The study’s objectives were to (i) map the positions of the centromeres of the nine <italic>Citrus clementina</italic> chromosomes; (ii) analyse the crossover interference in unreduced gametes; and (iii) establish the pattern of genetic recombination in haploid clementine gametes along each chromosome and its relationship with the centromere location and distribution of genic sequences.</p></sec><sec><title>Results</title><p>Triploid progenies were derived from unreduced megagametophytes produced by second-division restitution. Centromere positions were mapped genetically for all linkage groups using half-tetrad analysis. Inference of the physical locations of centromeres revealed one acrocentric, four metacentric and four submetacentric chromosomes. Crossover interference was observed in unreduced gametes, with variation seen between chromosome arms. For haploid gametes, a strong decrease in the recombination rate occurred in centromeric and pericentromeric regions, which contained a low density of genic sequences. In chromosomes VIII and IX, these low recombination rates extended beyond the pericentromeric regions. The genomic region corresponding to a genetic distance < 5cM from a centromere represented 47% of the genome and 23% of the genic sequences.</p></sec><sec><title>Conclusions</title><p>The centromere positions of the nine citrus chromosomes were genetically mapped. Their physical locations, inferred from the genetic ones, were consistent with the sequence constitution and recombination pattern along each chromosome. However, regions with low recombination rates extended beyond the pericentromeric regions of some chromosomes into areas richer in genic sequences. The persistence of strong linkage disequilibrium between large numbers of genes promotes the stability of epistatic interactions and multilocus-controlled traits over successive generations but also maintains multi-trait associations. Identification of the centromere positions will allow the development of simple methods to analyse unreduced gamete formation mechanisms in a large range of genotypes and further modelling of genetic inheritance in sexual polyploidisation breeding schemes.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12870-015-0464-y) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Hall, Ae" uniqKey="Hall A">AE Hall</name></author><author><name sortKey="Keith, Kc" uniqKey="Keith K">KC Keith</name></author><author><name sortKey="Hall, Se" uniqKey="Hall S">SE Hall</name></author><author><name sortKey="Copenhaver, Gp" uniqKey="Copenhaver G">GP Copenhaver</name></author><author><name sortKey="Preuss, D" uniqKey="Preuss D">D Preuss</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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Maria" sort="Hernandez, Maria" uniqKey="Hernandez M" first="María" last="Hernández">María Hernández</name><name sortKey="Juarez, Jose" sort="Juarez, Jose" uniqKey="Juarez J" first="José" last="Juárez">José Juárez</name><name sortKey="Navarro, Luis" sort="Navarro, Luis" uniqKey="Navarro L" first="Luis" last="Navarro">Luis Navarro</name><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name></country><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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